Docs
  • Introduction
  • Command Line Basics
  • Lawrence HPC
    • About Lawrence
    • Login
    • Filesystems
    • Transferring Files
    • Software on Lawrence
    • Submitting Jobs
    • Programming Environment
    • Gaussian Tutorial
    • Lumerical (FDTD) from Lawrence on Windows PC Tutorial
    • Lumerical (FDTD) on Lawrence GUI Tutorial
    • Helpful Hints
    • Jupyter on Lawrence
  • Globus
    • Globus Information
    • Globus Tutorials
    • .
  • Non-Lawrence Guides
    • Downloads
    • Software Installations on Windows
    • .
  • Archived Information
    • .
      • Legacy-Lawrence Migration
      • Ubuntu- from Login page
      • VNC
      • Non-Lawrence Tutorials
      • WARNING: These are the archives, not current information
      • Start Here
      • SSH Log In
      • Home Directory
      • Data Transfer
      • Interactive Session
      • Batch Compute Jobs
      • rclone for Google Drive
      • rclone for MS OneDrive
      • rclone for DropBox
      • Gaussian
      • Modules
      • PAUP
      • X11 Forwarding
      • TigerVNC
      • Logging in to an interactive session - qlogin
      • VNC
Powered by GitBook
On this page
  • Anaconda on Windows
  • Anaconda on Ubuntu on Windows
  • Installing Ubuntu on Windows
  • Installing Anaconda on Ubuntu on Windows
  • Bioconda on Windows on Ubuntu
  1. Non-Lawrence Guides

Software Installations on Windows

This page contains instructions for installing Anaconda/Bioconda on Windows, Ubuntu on Windows, Mac, a Lawrence account, and Jetstream

PreviousDownloadsNext.

Last updated 5 years ago

Warning: this site is under construction. The information may be incomplete.

Anaconda on Windows

To download Anaconda, go to the distribution website: .

Scroll down to the download section. Select "Windows", then select "Download".

Follow the installation wizard.

To open Anaconda, go to the start menu and expand the Anaconda3 folder.

Select "Anaconda Navigator".

Anaconda on Ubuntu on Windows

Installing Ubuntu on Windows

Ubuntu for Windows can be downloaded from the Microsoft store.

Search for "ubuntu".

Select the app.

Click "Get", then "Install".

Search for "Ubuntu" and select the app.

The window will look like this:

Installing Anaconda on Ubuntu on Windows

First, open Ubuntu for Windows (see above) and check to ensure that conda is not already installed.

user@NI0000:~$ which conda

If it has been, a file path will show up under the command, if not, the next line will be a prompt.

Download the installer

user@NI0000:~$ wget --quiet --no-check-certificate https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64
.sh
user@NI0000:~$ ls
Miniconda3-latest-Linux-x86_64.sh

Run the installer

user@NI0000:~$ bash Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/anaconda3
PREFIX=/home/adison/anaconda3
Unpacking payload ...
…
  zstd               pkgs/main/linux-64::zstd-1.3.7-h0b5b093_0
…
Preparing transaction: done
Executing transaction: done
installation finished.
…

user@NI0000:~$

Run an update:

user@NI0000:~$ $HOME/anaconda3/bin/conda update conda -y
Collecting package metadata (current_repodata.json): done
Solving environment: done
 ...

Executing transaction: done
user@NI0000:~$

Then install Anaconda

user@NI0000:~$ $HOME/anaconda3/bin/conda install anaconda -y
Collecting package metadata (current_repodata.json): done
Solving environment: done
 
## Package Plan ##
...
Verifying transaction: done
Executing transaction: / b'Enabling notebook extension jupyter-js-widgets/extension...\n      - Validating: \x1b[32mOK\x1b[0m\n'                                                                                                              done
user@NI0000:~$

Initialize

user@NI0000:~$ $HOME/anaconda3/bin/conda init
no change     /home/user/anaconda3/condabin/conda
...
no change     /home/user/anaconda3/etc/profile.d/conda.csh
modified      /home/user/.bashrc
 
==> For changes to take effect, close and re-open your current shell. <==
 
user@NI0000:~$

Close and re-open your Ubuntu command line.

Bioconda on Windows on Ubuntu

After running the installation of Anaconda on Ubuntu on Windows (see above), add bioconda:

user@NI0000:~$ conda config --add channels bioconda

The Users Guide should pop up ( webpage).

this
https://www.anaconda.com/distribution/