# Docs

## Docs

- [Introduction](https://usdrcg.gitbook.io/docs/readme.md)
- [Command Line Basics](https://usdrcg.gitbook.io/docs/command-line-basics.md)
- [About Lawrence](https://usdrcg.gitbook.io/docs/lawrence-hpc/about-lawrence.md)
- [Login](https://usdrcg.gitbook.io/docs/lawrence-hpc/login.md)
- [Filesystems](https://usdrcg.gitbook.io/docs/lawrence-hpc/filesystems.md)
- [Transferring Files](https://usdrcg.gitbook.io/docs/lawrence-hpc/transferring-files.md)
- [Software on Lawrence](https://usdrcg.gitbook.io/docs/lawrence-hpc/modules.md)
- [Submitting Jobs](https://usdrcg.gitbook.io/docs/lawrence-hpc/submitting-jobs.md)
- [Programming Environment](https://usdrcg.gitbook.io/docs/lawrence-hpc/programming-environment.md)
- [Gaussian Tutorial](https://usdrcg.gitbook.io/docs/lawrence-hpc/gaussview-gui.md)
- [Lumerical (FDTD) from Lawrence on Windows PC Tutorial](https://usdrcg.gitbook.io/docs/lawrence-hpc/lumerical-fdtd-on-windows-pc.md): This is a step-by-step guide for running Lumerical on Windows using the license available for Lawrence.
- [Lumerical (FDTD) on Lawrence GUI Tutorial](https://usdrcg.gitbook.io/docs/lawrence-hpc/lumerical-fdtd-on-lawrence-gui.md): Using Lumerical on Lawrence, through a point-and-click interface
- [Helpful Hints](https://usdrcg.gitbook.io/docs/lawrence-hpc/helpful-hints.md)
- [Jupyter on Lawrence](https://usdrcg.gitbook.io/docs/lawrence-hpc/jupyter-on-lawrence.md)
- [Globus Information](https://usdrcg.gitbook.io/docs/globus/globus-information.md)
- [Globus Tutorials](https://usdrcg.gitbook.io/docs/globus/globus-tutorials.md)
- [.](https://usdrcg.gitbook.io/docs/globus/globus.md): This page contains information on logging into Globus and linking a Lawrence home directory and a lab directory to Globus as endpoints, as well as sharing an endpoint with another Globus user.
- [Downloads](https://usdrcg.gitbook.io/docs/non-lawrence-guides/downloads.md)
- [Software Installations on Windows](https://usdrcg.gitbook.io/docs/non-lawrence-guides/anaconda-installation.md): This page contains instructions for installing Anaconda/Bioconda on Windows, Ubuntu on Windows, Mac, a Lawrence account, and Jetstream
- [.](https://usdrcg.gitbook.io/docs/non-lawrence-guides/untitled.md): Globus
- [.](https://usdrcg.gitbook.io/docs/practice/about-legacy.md): About Legacy
- [Legacy-Lawrence Migration](https://usdrcg.gitbook.io/docs/practice/about-legacy/legacy-lawrence-migration-instructions.md)
- [Ubuntu- from Login page](https://usdrcg.gitbook.io/docs/practice/about-legacy/ubuntu-from-login-page.md)
- [VNC](https://usdrcg.gitbook.io/docs/practice/about-legacy/vnc-1.md)
- [Non-Lawrence Tutorials](https://usdrcg.gitbook.io/docs/practice/about-legacy/non-lawrence-tutorials.md)
- [WARNING: These are the archives, not current information](https://usdrcg.gitbook.io/docs/practice/about-legacy/warning-these-pages-contain-information-that-is-outdated.md)
- [Start Here](https://usdrcg.gitbook.io/docs/practice/about-legacy/welcome-to-the-usdrcg-wiki.md)
- [SSH Log In](https://usdrcg.gitbook.io/docs/practice/about-legacy/ssh-log-in.md)
- [Home Directory](https://usdrcg.gitbook.io/docs/practice/about-legacy/home-directory-and-intro-to-the-command-line.md)
- [Data Transfer](https://usdrcg.gitbook.io/docs/practice/about-legacy/data-transfer.md)
- [Interactive Session](https://usdrcg.gitbook.io/docs/practice/about-legacy/interactive-session.md)
- [Batch Compute Jobs](https://usdrcg.gitbook.io/docs/practice/about-legacy/batch-compute-jobs.md)
- [rclone for Google Drive](https://usdrcg.gitbook.io/docs/practice/about-legacy/rclone-configuration-and-usage-for-google-drive.md)
- [rclone for MS OneDrive](https://usdrcg.gitbook.io/docs/practice/about-legacy/rclone-for-ms-onedrive.md)
- [rclone for DropBox](https://usdrcg.gitbook.io/docs/practice/about-legacy/rclone-for-dropbox.md)
- [Gaussian](https://usdrcg.gitbook.io/docs/practice/about-legacy/gaussian.md)
- [Modules](https://usdrcg.gitbook.io/docs/practice/about-legacy/fortran.md)
- [PAUP](https://usdrcg.gitbook.io/docs/practice/about-legacy/geant4.md)
- [X11 Forwarding](https://usdrcg.gitbook.io/docs/practice/about-legacy/x11-forwarding.md)
- [TigerVNC](https://usdrcg.gitbook.io/docs/practice/about-legacy/tigervnc.md)
- [Logging in to an interactive session - qlogin](https://usdrcg.gitbook.io/docs/practice/about-legacy/logging-in-to-an-interactive-session-qlogin.md)
- [VNC](https://usdrcg.gitbook.io/docs/practice/about-legacy/vnc.md)


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information, you can query the documentation dynamically by asking a question.
Perform an HTTP GET request on a page URL with the `ask` query parameter:
```
GET https://usdrcg.gitbook.io/docs/readme.md?ask=<question>
```
The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.
Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
